STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddpXD-Ala-D-Ala dipeptidase vanX. Metallo peptidase. MEROPS family M15D; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (272 aa)    
Predicted Functional Partners:
SHL79163.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.812
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.793
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.787
SHL79142.1
Membrane dipeptidase.
       0.787
SHL79219.1
N-acetylmuramoyl-L-alanine amidase.
    
  0.749
SHL79199.1
CubicO group peptidase, beta-lactamase class C family.
      0.692
SHL79103.1
TonB-dependent Receptor Plug Domain.
 
     0.599
anmK
anhydro-N-acetylmuramic acid kinase; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
  
  0.591
SHL79066.1
Uncharacterized membrane protein.
 
     0.511
SHL79086.1
Transglutaminase-like enzyme, putative cysteine protease.
 
     0.509
Your Current Organism:
Rhodanobacter sp. OK091
NCBI taxonomy Id: 1881037
Other names: R. sp. OK091
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