STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ26618.1Putative Zn-dependent protease, contains TPR repeats. (560 aa)    
Predicted Functional Partners:
SDI69947.1
TolB amino-terminal domain-containing protein.
    
 0.837
SDJ46599.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
 
 
 0.834
SDJ77379.1
Tfp pilus assembly protein PilF.
 
  
 0.832
SDK45251.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
    
 0.832
SDJ76222.1
Tfp pilus assembly protein PilF.
 
  
 0.831
SDJ30890.1
Tfp pilus assembly protein PilF.
    
 0.815
SDJ04200.1
Tetratricopeptide repeat-containing protein.
    
 0.801
SDJ91079.1
Predicted methyltransferase, contains TPR repeat.
    
 0.801
SDK47778.1
Hypothetical protein.
    
 0.801
SDK52873.1
TIGR03790 family protein.
 
  
 0.773
Your Current Organism:
Duganella sp. OV510
NCBI taxonomy Id: 1881039
Other names: D. sp. OV510
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