STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28294.1GTP-binding protein HflX. (448 aa)    
Predicted Functional Partners:
SFV28988.1
LSU ribosomal protein L11P.
    
 
 0.973
SFV27670.1
LSU ribosomal protein L32P.
    
 
 0.967
SFV35992.1
LSU ribosomal protein L21P.
   
   0.965
SFV36052.1
LSU ribosomal protein L19P.
   
   0.965
SFV28873.1
LSU ribosomal protein L17P.
    
   0.964
SFV28953.1
LSU ribosomal protein L4P.
    
 
 0.964
SFV28957.1
LSU ribosomal protein L3P.
    
 
 0.964
SFV33507.1
LSU ribosomal protein L33P.
    
   0.964
SFV35564.1
LSU ribosomal protein L20P.
    
   0.964
SFV35994.1
LSU ribosomal protein L27P.
   
   0.964
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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