STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV29350.1Chemosensory pili system protein ChpB (putative protein-glutamate methylesterase). (414 aa)    
Predicted Functional Partners:
SFV29354.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
 0.998
SFV30969.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.981
SFV29357.1
Twitching motility protein PilJ.
  
 0.972
SFV26064.1
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase.
  
 0.965
SFV26054.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.952
SFV26097.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.947
SFV26084.1
Two-component system, chemotaxis family, sensor kinase CheA.
  
 0.946
SFV29360.1
Twitching motility protein PilI.
 
 
 0.905
SFV34028.1
Hpt sensor hybrid histidine kinase.
  
 0.891
SFV33499.1
PAS domain S-box-containing protein.
  
 0.882
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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