STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV29549.1Protein of unknown function. (158 aa)    
Predicted Functional Partners:
SFV29570.1
Beta-barrel assembly machine subunit BamD.
   
 0.971
SFV35843.1
Beta-barrel assembly machine subunit BamA.
    
 0.970
SFV36177.1
Beta-barrel assembly machine subunit BamC.
   
 0.942
SFV26316.1
Beta-barrel assembly machine subunit BamB.
    
 0.915
SFV29546.1
Putative MFS transporter, AGZA family, xanthine/uracil permease.
 
     0.746
SFV26140.1
Flagellar FliJ protein.
  
     0.658
SFV26261.1
Hypothetical protein.
  
     0.649
SFV28609.1
Hypothetical protein.
  
     0.550
SFV26941.1
Hypothetical protein.
  
     0.530
SFV35422.1
Protein of unknown function.
  
     0.530
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.