STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV29570.1Beta-barrel assembly machine subunit BamD. (295 aa)    
Predicted Functional Partners:
SFV35843.1
Beta-barrel assembly machine subunit BamA.
 
 0.999
SFV26606.1
Beta-barrel assembly machine subunit BamE.
  
 0.998
SFV26316.1
Beta-barrel assembly machine subunit BamB.
 
 0.995
SFV36177.1
Beta-barrel assembly machine subunit BamC.
    
 0.992
SFV29549.1
Protein of unknown function.
   
 0.971
SFV34552.1
DNA-directed RNA polymerase subunit omega.
 
 
 
 0.796
SFV31449.1
Preprotein translocase subunit SecB.
  
   
 0.729
SFV29244.1
LPS-assembly protein.
 
  
 0.724
SFV36485.1
Phospholipase A1.
    
   0.702
SFV29568.1
Ribosomal large subunit pseudouridine synthase D.
  
    0.698
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.