STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV30807.1O-antigen ligase. (417 aa)    
Predicted Functional Partners:
SFV30423.1
3-deoxy-D-manno-octulosonic-acid transferase.
    
 0.929
SFV34415.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.710
SFV30804.1
Glycosyl transferases group 1.
 
 
  0.672
SFV36340.1
Hypothetical protein.
  
     0.654
SFV26589.1
Transglutaminase-like superfamily protein.
  
     0.629
SFV27799.1
Heptosyltransferase I.
 
 
 0.601
SFV30103.1
Type IV secretion system protein VirB8.
  
     0.601
SFV30099.1
Type IV secretion system protein VirB9.
  
     0.568
SFV29400.1
Glycosyltransferase, GT2 family.
  
 
 0.560
SFV35101.1
Hypothetical protein.
  
     0.537
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.