STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV31750.1LSU ribosomal protein L34P. (46 aa)    
Predicted Functional Partners:
SFV33509.1
LSU ribosomal protein L28P.
   
 
 0.997
SFV35992.1
LSU ribosomal protein L21P.
  
 
 0.997
SFV35999.1
SSU ribosomal protein S20P.
  
 
 0.997
SFV27670.1
LSU ribosomal protein L32P.
   
 
 0.996
SFV30039.1
LSU ribosomal protein L13P.
   
 
 0.996
SFV36045.1
Small subunit ribosomal protein S16.
   
 
 0.996
SFV28914.1
SSU ribosomal protein S14P.
  
 
 0.995
SFV28969.1
SSU ribosomal protein S12P.
   
 
 0.995
SFV31206.1
SSU ribosomal protein S21P.
   
 
 0.995
SFV35561.1
LSU ribosomal protein L35P.
  
 
 0.995
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.