STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV34374.16-phosphogluconate dehydrogenase (decarboxylating). (301 aa)    
Predicted Functional Partners:
SFV31921.1
Glucose-6-phosphate 1-dehydrogenase.
 
 0.983
SFV31917.1
6-phosphogluconolactonase.
 
  
 0.974
SFV25976.1
6-phosphogluconate dehydratase.
     
 0.949
SFV34501.1
Ribose-5-phosphate isomerase.
 
  
 0.944
SFV30147.1
Ribulose-phosphate 3-epimerase.
     
 0.925
SFV34002.1
Xylulokinase.
  
 
 0.601
SFV34942.1
succinyl-CoA synthetase (ADP-forming) beta subunit.
      
 0.542
SFV31447.1
Glycerol 3-phosphate dehydrogenase (NAD(P)+).
      
 0.536
SFV34371.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.532
SFV34376.1
Putative intracellular protease/amidase.
       0.529
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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