STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV34568.1Iron complex outermembrane recepter protein. (816 aa)    
Predicted Functional Partners:
SFV34562.1
Parallel beta-helix repeat-containing protein.
 
     0.857
SFV31036.1
TonB-dependent Receptor Plug Domain.
  
  
  0.855
SFV31927.1
Conserved repeat domain-containing protein.
  
  
  0.847
SFV33664.1
Secretin and TonB N terminus short domain-containing protein.
  
 
  0.831
SFV30584.1
OmpA family protein.
  
  
  0.804
SFV34565.1
Conserved hypothetical protein, HNE_0200 family.
 
     0.804
SFV31760.1
Outer membrane transport energization protein TonB.
  
  0.783
SFV32133.1
Hypothetical protein.
  
  
  0.783
SFV36237.1
TonB-dependent Receptor Plug Domain.
  
 
  0.779
SFV30012.1
OmpA family protein.
  
  
  0.755
Your Current Organism:
Pseudoxanthomonas sp. YR558
NCBI taxonomy Id: 1881044
Other names: P. sp. YR558
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.