STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC34465.1BNR/Asp-box repeat-containing protein. (788 aa)    
Predicted Functional Partners:
SDD33459.1
Glycosyl hydrolase family 12; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.903
SDD34405.1
Endoglucanase.
 
 
 0.890
SDF48224.1
Right handed beta helix region.
 
 
  0.879
SDF51481.1
Right handed beta helix region.
 
 
  0.877
SDD17969.1
Rhamnogalacturonan endolyase.
 
 
 0.870
SDE02639.1
Pectate lyase.
  
  
 0.828
SDD33585.1
Endo-1,4-beta-xylanase.
 
  
 0.819
SDF48181.1
Hypothetical protein.
 
 
 0.815
SDF87303.1
Glycosyl hydrolase family 67 N-terminus.
  
 
  0.812
SDD33310.1
Glycosyl hydrolase family 115.
  
 
  0.811
Your Current Organism:
Massilia sp. PDC64
NCBI taxonomy Id: 1881046
Other names: M. sp. PDC64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.