STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF50088.1Polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (474 aa)    
Predicted Functional Partners:
SDC30840.1
Pectinesterase.
 
  
 0.952
SDF48258.1
Lysophospholipase L1.
 
  0.934
SDF49097.1
Lysophospholipase L1.
 
 
  0.910
SDD02565.1
Glycosyl hydrolase family 115.
  
 
 0.856
SDD20747.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.832
SDD03053.1
Sialate O-acetylesterase.
 
 
  0.818
SDD99802.1
Sialate O-acetylesterase.
 
 
  0.810
SDF40254.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.805
SDD33310.1
Glycosyl hydrolase family 115.
  
 
 0.800
SDF87303.1
Glycosyl hydrolase family 67 N-terminus.
  
 
 0.798
Your Current Organism:
Massilia sp. PDC64
NCBI taxonomy Id: 1881046
Other names: M. sp. PDC64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.