STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ62922.1Protein N-acetyltransferase, RimJ/RimL family. (251 aa)    
Predicted Functional Partners:
SEQ62954.1
Uncharacterized conserved protein, DUF1501 family.
       0.820
SEQ62978.1
Uncharacterized conserved protein, DUF1800 family.
       0.819
SEP58574.1
Glutamate synthase (NADPH/NADH) large chain.
   
 
 0.682
SEQ77434.1
Mannose-1-phosphate guanylyltransferase/mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.515
SEQ52889.1
Predicted kinase, aminoglycoside phosphotransferase (APT) family.
    
  0.505
SEQ63009.1
Lipoprotein-anchoring transpeptidase ErfK/SrfK.
       0.495
rnc
Ribonuclease-3; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.461
guaB
IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.420
Your Current Organism:
Loktanella sp. DSM 29012
NCBI taxonomy Id: 1881056
Other names: L. sp. DSM 29012
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