Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKA76665.1 | SKA86235.1 | SAMN05428976_102333 | SAMN05428976_10857 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | Chorismate mutase. | 0.953 |
SKA76665.1 | SKA86298.1 | SAMN05428976_102333 | SAMN05428976_10861 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | Prephenate dehydrogenase. | 0.837 |
SKA76665.1 | SKA86304.1 | SAMN05428976_102333 | SAMN05428976_10862 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.471 |
SKA76665.1 | aroA | SAMN05428976_102333 | SAMN05428976_10859 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.719 |
SKA76665.1 | aroB | SAMN05428976_102333 | SAMN05428976_10860 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.849 |
SKA76665.1 | aroC | SAMN05428976_102333 | SAMN05428976_10858 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.745 |
SKA76665.1 | aroE | SAMN05428976_102333 | SAMN05428976_10582 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.585 |
SKA76665.1 | aroK | SAMN05428976_102333 | SAMN05428976_10583 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.691 |
SKA76665.1 | aroQ | SAMN05428976_102333 | SAMN05428976_10584 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.621 |
SKA76665.1 | topA | SAMN05428976_102333 | SAMN05428976_102282 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.538 |
SKA86235.1 | SKA76665.1 | SAMN05428976_10857 | SAMN05428976_102333 | Chorismate mutase. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase. | 0.953 |
SKA86235.1 | SKA86298.1 | SAMN05428976_10857 | SAMN05428976_10861 | Chorismate mutase. | Prephenate dehydrogenase. | 0.992 |
SKA86235.1 | SKA86304.1 | SAMN05428976_10857 | SAMN05428976_10862 | Chorismate mutase. | 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase. | 0.998 |
SKA86235.1 | aroA | SAMN05428976_10857 | SAMN05428976_10859 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.998 |
SKA86235.1 | aroB | SAMN05428976_10857 | SAMN05428976_10860 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.991 |
SKA86235.1 | aroC | SAMN05428976_10857 | SAMN05428976_10858 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.998 |
SKA86235.1 | aroE | SAMN05428976_10857 | SAMN05428976_10582 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.983 |
SKA86235.1 | aroK | SAMN05428976_10857 | SAMN05428976_10583 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.987 |
SKA86235.1 | aroQ | SAMN05428976_10857 | SAMN05428976_10584 | Chorismate mutase. | 3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.896 |
SKA86235.1 | topA | SAMN05428976_10857 | SAMN05428976_102282 | Chorismate mutase. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.428 |
page 1 of 6