STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDP86412.1anti-ECFsigma factor, ChrR. (215 aa)    
Predicted Functional Partners:
SDP86404.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.994
SDP86394.1
Hypothetical protein.
 
  
 0.926
SDP80746.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 
 0.924
SDP86384.1
Hypothetical protein.
 
  
 0.879
SDP86422.1
Acetyl esterase/lipase; Manually curated.
 
     0.773
SDO80176.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.747
SDP56373.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family.
  
 
 0.747
SDP86375.1
Deoxyribodipyrimidine photo-lyase type I; Belongs to the DNA photolyase family.
 
   
 0.672
SDP40877.1
CheY chemotaxis protein or a CheY-like REC (receiver) domain.
   
 
 0.510
SDP06555.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.505
Your Current Organism:
Phyllobacterium sp. YR620
NCBI taxonomy Id: 1881066
Other names: P. sp. YR620
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.