STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bamDBeta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (348 aa)    
Predicted Functional Partners:
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
 
 0.990
SEJ23176.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
 
 
 0.978
SEJ78730.1
Beta-barrel assembly machine subunit BamE.
  
 
 0.961
SEI78269.1
Hypothetical protein.
   
 
 0.936
SEI74253.1
Hypothetical protein.
   
 
 0.936
SEI73583.1
DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA.
 
     0.818
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 
 0.796
SEI73657.1
Mannose-6-phosphate isomerase, type 1.
       0.712
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.703
SEJ16990.1
Signal peptidase I Serine peptidase. MEROPS family S26A; Belongs to the peptidase S26 family.
 
  
 0.697
Your Current Organism:
Sphingomonas sp. OV641
NCBI taxonomy Id: 1881068
Other names: S. sp. OV641
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.