STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SED50382.1Iron complex outermembrane recepter protein. (703 aa)    
Predicted Functional Partners:
SEB50342.1
Outer membrane transport energization protein TonB.
 
 0.804
SEC71217.1
Protein TonB.
 
 0.737
SEC72497.1
Uncharacterized iron-regulated membrane protein.
 
   
 0.726
SEC75864.1
Iron complex outermembrane recepter protein.
  
   
 0.705
SEB64382.1
Hypothetical protein.
  
 0.697
SEB82758.1
Protein TonB.
  
 0.697
SEC26676.1
Protein TonB.
  
 0.697
SED32399.1
TonB family C-terminal domain-containing protein.
  
 0.697
SEB55036.1
Catecholate siderophore receptor.
  
  
 0.670
SED38669.1
Catecholate siderophore receptor.
  
  
 0.666
Your Current Organism:
Beijerinckia sp. 28YEA48
NCBI taxonomy Id: 1882748
Other names: B. sp. 28-YEA-48, Beijerinckia sp. 28-YEA-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.