STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHI06453.1Starch-binding associating with outer membrane. (506 aa)    
Predicted Functional Partners:
SHI06435.1
TonB-linked outer membrane protein, SusC/RagA family.
 
     0.939
SHH97299.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.732
SHI06422.1
Two component regulator propeller.
 
     0.727
SHI06407.1
Protein of unknown function.
 
 
   0.713
SHH97997.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.713
SHI06478.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
 
     0.710
SHI06465.1
Glycosyl Hydrolase Family 88.
 
     0.703
SHH52110.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.663
SHH90888.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.662
SHH67843.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.660
Your Current Organism:
Flavobacterium sp. CF108
NCBI taxonomy Id: 1882758
Other names: F. sp. CF108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.