SEM56376.1 protein (Bradyrhizobium sp. OK095)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEM56376.1

Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (329 aa)

Predicted Functional Partners:

SEM56431.1

0.945

SEM56446.1

0.921

SEM56397.1

0.917

SEM56288.1

0.898

SEM88264.1

0.890

SEN33008.1

0.890

SEN25231.1

0.882

SEM44119.1

0.873

SEN79279.1

0.872

SEN79253.1

0.868

Your Current Organism:

Bradyrhizobium sp. OK095

NCBI taxonomy Id: 1882760
Other names: B. sp. OK095

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEM44119.1	SEM56376.1	SAMN05443254_10257	SAMN05443254_102650	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.873
SEM44119.1	SEM56397.1	SAMN05443254_10257	SAMN05443254_102651	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.802
SEM44119.1	SEM56431.1	SAMN05443254_10257	SAMN05443254_102653	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.880
SEM44119.1	SEN79279.1	SAMN05443254_10257	SAMN05443254_111190	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.881
SEM56288.1	SEM56376.1	SAMN05443254_102645	SAMN05443254_102650	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.898
SEM56288.1	SEM56397.1	SAMN05443254_102645	SAMN05443254_102651	Peptide/nickel transport system permease protein.	Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.826
SEM56288.1	SEM56431.1	SAMN05443254_102645	SAMN05443254_102653	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.887
SEM56288.1	SEM56446.1	SAMN05443254_102645	SAMN05443254_102654	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.402
SEM56288.1	SEN79279.1	SAMN05443254_102645	SAMN05443254_111190	Peptide/nickel transport system permease protein.	Peptide/nickel transport system permease protein.	0.853
SEM56376.1	SEM44119.1	SAMN05443254_102650	SAMN05443254_10257	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.873
SEM56376.1	SEM56288.1	SAMN05443254_102650	SAMN05443254_102645	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.898
SEM56376.1	SEM56397.1	SAMN05443254_102650	SAMN05443254_102651	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.917
SEM56376.1	SEM56431.1	SAMN05443254_102650	SAMN05443254_102653	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.945
SEM56376.1	SEM56446.1	SAMN05443254_102650	SAMN05443254_102654	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.921
SEM56376.1	SEM88264.1	SAMN05443254_102650	SAMN05443254_104286	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.890
SEM56376.1	SEN25231.1	SAMN05443254_102650	SAMN05443254_10714	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.882
SEM56376.1	SEN33008.1	SAMN05443254_102650	SAMN05443254_107330	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.890
SEM56376.1	SEN79253.1	SAMN05443254_102650	SAMN05443254_111189	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.868
SEM56376.1	SEN79279.1	SAMN05443254_102650	SAMN05443254_111190	Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.872
SEM56397.1	SEM44119.1	SAMN05443254_102651	SAMN05443254_10257	Peptide/nickel transport system ATP-binding protein/oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Peptide/nickel transport system permease protein.	0.802