STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN83275.1Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains. (379 aa)    
Predicted Functional Partners:
SDM71146.1
N-terminal domain of peptidoglycan hydrolase CwlO-containing protein.
  
 0.904
SDM46833.1
LysM domain-containing protein.
 
  
 0.869
rsmA
16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.821
SDN16039.1
N-terminal domain of peptidoglycan hydrolase CwlO-containing protein.
  
 0.738
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
     
 0.716
SDM21938.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.710
SDM03784.1
Uncharacterized conserved protein YlxW, UPF0749 family.
 
     0.708
SDN51551.1
Cell wall-associated hydrolase, NlpC family.
 
  
 0.696
SDN58905.1
LysM domain-containing protein.
  
 
  0.691
SDM03717.1
Small basic protein.
  
     0.674
Your Current Organism:
Bacillus sp. OK048
NCBI taxonomy Id: 1882761
Other names: B. sp. OK048
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.