STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC07927.1Hypothetical protein. (559 aa)    
Predicted Functional Partners:
SDE41001.1
Amino acid adenylation domain-containing protein.
   
 0.723
SDD08257.1
Rhodanese-related sulfurtransferase.
  
 0.659
SDE51609.1
Rhodanese-related sulfurtransferase.
  
 0.659
SDC48577.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
    
 0.611
SDC73943.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
    
 0.611
SDD01561.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
    
 0.611
SDE49277.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
    
 0.611
SDC25928.1
Catechol 2,3-dioxygenase.
   
 
  0.547
SDD30130.1
Amino acid adenylation domain-containing protein.
 
 
 
 0.496
SDC34521.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
     
 0.488
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.