STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC12108.14-oxalocrotonate tautomerase. (70 aa)    
Predicted Functional Partners:
SDC12064.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
    0.803
SDC25928.1
Catechol 2,3-dioxygenase.
  
 
 0.592
SDE89334.1
Catechol 2,3-dioxygenase.
    
 0.555
SDC26321.1
2-keto-4-pentenoate hydratase.
    
 0.520
SDC26345.1
2-oxo-3-hexenedioate decarboxylase.
    
 0.520
SDC76140.1
2-oxohept-3-enedioate hydratase.
    
 0.520
SDE72849.1
2-oxo-3-hexenedioate decarboxylase.
    
 0.520
SDE72873.1
2-keto-4-pentenoate hydratase.
    
 0.520
SDC12026.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.511
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.