STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC12408.1Uncharacterized conserved protein. (118 aa)    
Predicted Functional Partners:
SDC12369.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.951
SDE11366.1
RNA polymerase, sigma subunit, ECF family; Belongs to the sigma-70 factor family.
 
     0.784
SDE12564.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.784
SDC12330.1
Putative ABC transport system permease protein.
       0.697
SDC12446.1
Predicted arabinose efflux permease, MFS family.
       0.664
SDC12288.1
Protein of unknown function.
       0.465
SDC12490.1
Hypothetical protein.
       0.448
SDC12252.1
Predicted N-acetyltransferase YhbS.
       0.416
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.