STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC27920.1CHAT domain-containing protein. (420 aa)    
Predicted Functional Partners:
SDC27793.1
CHAT domain-containing protein.
 
     0.936
SDC27764.1
Hypothetical protein.
 
     0.848
SDC27884.1
Hypothetical protein.
       0.785
SDC27847.1
GYD domain-containing protein.
       0.773
SDC50760.1
ATPase family associated with various cellular activities (AAA).
 
     0.711
SDC50308.1
CHAT domain-containing protein.
  
     0.707
SDC51143.1
Hypothetical protein.
 
     0.672
SDC50536.1
Hypothetical protein.
 
     0.659
SDC51185.1
Putative baseplate assembly protein.
 
     0.654
SDC51107.1
Hypothetical protein.
  
     0.649
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.