STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC28916.1O-Methyltransferase involved in polyketide biosynthesis. (278 aa)    
Predicted Functional Partners:
SDC28891.1
Hypothetical protein.
     
 0.741
purN
Phosphoribosylglycinamide formyltransferase-1; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
     
 0.696
SDC28848.1
Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family.
 
     0.691
SDC79122.1
Conserved hypothetical protein, steroid delta-isomerase-related.
  
     0.586
SDE41001.1
Amino acid adenylation domain-containing protein.
 
   
 0.556
SDC66793.1
Amino acid adenylation domain-containing protein.
 
   
 0.549
SDE79749.1
Hypothetical protein.
  
     0.507
SDC82175.1
UDP:flavonoid glycosyltransferase YjiC, YdhE family.
  
  
  0.498
SDD30130.1
Amino acid adenylation domain-containing protein.
 
   
 0.465
SDD54957.1
Hypothetical protein.
  
     0.459
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.