STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC36736.1GntR family transcriptional regulator, vanillate catabolism transcriptional regulator. (251 aa)    
Predicted Functional Partners:
SDC36695.1
Vanillate demethylase subunit A.
 
  
 0.878
SDC36764.1
Vanillate demethylase subunit B.
 
   
 0.811
SDC12661.1
Transcriptional regulator, GntR family.
  
     0.770
SDC30735.1
DNA-binding transcriptional regulator, GntR family.
  
     0.768
SDC27549.1
DNA-binding transcriptional regulator, GntR family.
  
     0.763
SDC26860.1
DNA-binding transcriptional regulator, GntR family.
  
     0.749
SDC92919.1
Transcriptional regulator, GntR family.
  
     0.738
SDC31276.1
Transcriptional regulator, GntR family.
  
  
 0.731
SDD32049.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
  
  
 0.724
SDE93902.1
DNA-binding transcriptional regulator, FadR family.
  
  
 0.713
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.