Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC42245.1 | SDC83766.1 | SAMN05444679_10323 | SAMN05444679_105314 | AraC family transcriptional regulator. | Helix-turn-helix domain-containing protein. | 0.791 |
SDC42245.1 | SDD03265.1 | SAMN05444679_10323 | SAMN05444679_10752 | AraC family transcriptional regulator. | Glutamate synthase (NADH) large subunit. | 0.728 |
SDC42245.1 | SDD62535.1 | SAMN05444679_10323 | SAMN05444679_11261 | AraC family transcriptional regulator. | AraC-type DNA-binding protein. | 0.705 |
SDC42245.1 | SDD63062.1 | SAMN05444679_10323 | SAMN05444679_11275 | AraC family transcriptional regulator. | AraC-type DNA-binding protein. | 0.696 |
SDC42245.1 | SDD76581.1 | SAMN05444679_10323 | SAMN05444679_113148 | AraC family transcriptional regulator. | AraC-type DNA-binding protein. | 0.626 |
SDC42245.1 | SDE34640.1 | SAMN05444679_10323 | SAMN05444679_1215 | AraC family transcriptional regulator. | Signal transduction histidine kinase. | 0.564 |
SDC42245.1 | SDE40739.1 | SAMN05444679_10323 | SAMN05444679_1223 | AraC family transcriptional regulator. | AraC-type DNA-binding protein. | 0.732 |
SDC42245.1 | SDE59172.1 | SAMN05444679_10323 | SAMN05444679_125124 | AraC family transcriptional regulator. | Transcriptional regulator, AraC family. | 0.613 |
SDC42245.1 | SDE75785.1 | SAMN05444679_10323 | SAMN05444679_13056 | AraC family transcriptional regulator. | Transcriptional regulator, AraC family with amidase-like domain. | 0.686 |
SDC42245.1 | rpoA | SAMN05444679_10323 | SAMN05444679_106249 | AraC family transcriptional regulator. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.567 |
SDC83766.1 | SDC42245.1 | SAMN05444679_105314 | SAMN05444679_10323 | Helix-turn-helix domain-containing protein. | AraC family transcriptional regulator. | 0.791 |
SDC83766.1 | SDD62535.1 | SAMN05444679_105314 | SAMN05444679_11261 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.668 |
SDC83766.1 | SDD63062.1 | SAMN05444679_105314 | SAMN05444679_11275 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.633 |
SDC83766.1 | SDD76581.1 | SAMN05444679_105314 | SAMN05444679_113148 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.682 |
SDC83766.1 | SDE40739.1 | SAMN05444679_105314 | SAMN05444679_1223 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.712 |
SDC83766.1 | SDE75785.1 | SAMN05444679_105314 | SAMN05444679_13056 | Helix-turn-helix domain-containing protein. | Transcriptional regulator, AraC family with amidase-like domain. | 0.737 |
SDD03265.1 | SDC42245.1 | SAMN05444679_10752 | SAMN05444679_10323 | Glutamate synthase (NADH) large subunit. | AraC family transcriptional regulator. | 0.728 |
SDD03265.1 | SDD62535.1 | SAMN05444679_10752 | SAMN05444679_11261 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.728 |
SDD03265.1 | SDD63062.1 | SAMN05444679_10752 | SAMN05444679_11275 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.728 |
SDD03265.1 | SDD76581.1 | SAMN05444679_10752 | SAMN05444679_113148 | Glutamate synthase (NADH) large subunit. | AraC-type DNA-binding protein. | 0.728 |
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