Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDC51954.1 | SDC51991.1 | SAMN05444679_103270 | SAMN05444679_103271 | Threonine dehydratase. | Predicted amidohydrolase. | 0.755 |
SDC51954.1 | SDC77668.1 | SAMN05444679_103270 | SAMN05444679_105131 | Threonine dehydratase. | 5-methyltetrahydrofolate--homocysteine methyltransferase. | 0.724 |
SDC51954.1 | SDC78281.1 | SAMN05444679_103270 | SAMN05444679_105150 | Threonine dehydratase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.738 |
SDC51954.1 | SDD09184.1 | SAMN05444679_103270 | SAMN05444679_107232 | Threonine dehydratase. | Threonine dehydratase. | 0.750 |
SDC51954.1 | SDD61979.1 | SAMN05444679_103270 | SAMN05444679_11247 | Threonine dehydratase. | Acetolactate synthase-1/2/3 large subunit; Belongs to the TPP enzyme family. | 0.733 |
SDC51954.1 | SDD85536.1 | SAMN05444679_103270 | SAMN05444679_114130 | Threonine dehydratase. | Acetolactate synthase, small subunit. | 0.867 |
SDC51954.1 | SDE29771.1 | SAMN05444679_103270 | SAMN05444679_12079 | Threonine dehydratase. | Threonine synthase. | 0.862 |
SDC51954.1 | ilvA | SAMN05444679_103270 | SAMN05444679_11952 | Threonine dehydratase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.743 |
SDC51954.1 | ilvE | SAMN05444679_103270 | SAMN05444679_10577 | Threonine dehydratase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.763 |
SDC51954.1 | trpB | SAMN05444679_103270 | SAMN05444679_108156 | Threonine dehydratase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.752 |
SDC51991.1 | SDC51954.1 | SAMN05444679_103271 | SAMN05444679_103270 | Predicted amidohydrolase. | Threonine dehydratase. | 0.755 |
SDC51991.1 | ilvE | SAMN05444679_103271 | SAMN05444679_10577 | Predicted amidohydrolase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.458 |
SDC77668.1 | SDC51954.1 | SAMN05444679_105131 | SAMN05444679_103270 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Threonine dehydratase. | 0.724 |
SDC77668.1 | SDC78281.1 | SAMN05444679_105131 | SAMN05444679_105150 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.895 |
SDC77668.1 | SDD09184.1 | SAMN05444679_105131 | SAMN05444679_107232 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Threonine dehydratase. | 0.891 |
SDC77668.1 | SDD85536.1 | SAMN05444679_105131 | SAMN05444679_114130 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Acetolactate synthase, small subunit. | 0.535 |
SDC77668.1 | SDE29771.1 | SAMN05444679_105131 | SAMN05444679_12079 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Threonine synthase. | 0.436 |
SDC77668.1 | ilvA | SAMN05444679_105131 | SAMN05444679_11952 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | L-threonine ammonia-lyase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.932 |
SDC77668.1 | ilvE | SAMN05444679_105131 | SAMN05444679_10577 | 5-methyltetrahydrofolate--homocysteine methyltransferase. | Branched chain amino acid aminotransferase apoenzyme; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. | 0.492 |
SDC78281.1 | SDC51954.1 | SAMN05444679_105150 | SAMN05444679_103270 | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Threonine dehydratase. | 0.738 |
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