STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC43983.1Phage integrase family protein. (452 aa)    
Predicted Functional Partners:
SDC44018.1
Replication region DNA-binding N-term.
 
   
 0.896
SDC50077.1
Replication region DNA-binding N-term.
 
   
 0.779
SDC93412.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
  0.696
SDC43941.1
Hypothetical protein.
 
    
0.539
SDD94777.1
Hypothetical protein.
  
    0.517
SDE23492.1
Protein of unknown function.
  
     0.511
SDD15126.1
Methylglyoxal synthase.
  
     0.484
SDE23520.1
ATP-binding cassette, subfamily B.
  
     0.480
SDC33692.1
Prephenate dehydrogenase.
  
    0.477
SDC13405.1
N-terminal domain of uncharacterized protein YciW-containing protein.
  
     0.476
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.