STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC44643.1Caspase domain-containing protein. (280 aa)    
Predicted Functional Partners:
SDC50760.1
ATPase family associated with various cellular activities (AAA).
 
 
 0.893
SDC78246.1
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family.
   
 0.842
SDE43292.1
Probable Rubsico expression protein CbbX.
   
 0.842
SDC44680.1
CHAT domain-containing protein.
 
     0.824
SDD65041.1
GAF domain-containing protein.
 
 
 0.752
SDC93412.1
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.703
SDC26558.1
PAS domain S-box-containing protein.
  
 
 0.598
SDD65087.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
   
 0.585
SDD14146.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.574
SDE34525.1
Response regulator receiver domain-containing protein.
  
 0.574
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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