STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC61119.1Dehydrogenase (flavoprotein). (454 aa)    
Predicted Functional Partners:
SDE41001.1
Amino acid adenylation domain-containing protein.
  
 
 0.901
SDD44319.1
Acyl-coenzyme A synthetase/AMP-(fatty) acid ligase.
 
  
 0.801
SDD44401.1
Acyl carrier protein.
 
    0.787
SDC75505.1
Beta-ketoacyl synthase, N-terminal domain.
 
   
 0.783
SDD44283.1
Predicted acyltransferase, LPLAT superfamily.
 
     0.782
SDD44212.1
Predicted exporter.
 
     0.780
SDD44087.1
Predicted 3-hydroxylacyl-ACP dehydratase, HotDog domain.
 
     0.776
SDD44008.1
Hypothetical protein.
 
     0.774
SDD44249.1
Outer membrane lipoprotein-sorting protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.768
SDD44128.1
Methyltransferase domain-containing protein.
 
  
 0.757
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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