STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC62723.1ABC-type transport system, substrate-binding protein. (555 aa)    
Predicted Functional Partners:
SDC62699.1
Peptide/nickel transport system permease protein.
 
 0.951
SDC62663.1
Peptide/nickel transport system permease protein.
 
 0.948
SDC62626.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.886
SDC62595.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.851
SDE22770.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.786
SDE40865.1
Peptide/nickel transport system permease protein.
 
 0.784
SDE22815.1
Peptide/nickel transport system permease protein.
 
 0.777
SDD42801.1
Peptide/nickel transport system permease protein.
 
 0.715
SDE40834.1
Peptide/nickel transport system permease protein.
 
 0.711
SDE22889.1
Peptide/nickel transport system permease protein.
 
 0.695
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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