STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC63668.12-Methylisocitrate lyase, PEP mutase family. (290 aa)    
Predicted Functional Partners:
SDE09387.1
2-methylcitrate dehydratase.
 
 
 0.930
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.915
SDD18084.1
Aconitate hydratase.
 
 0.902
SDE09418.1
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
 0.901
SDD18191.1
Aconitase; Belongs to the aconitase/IPM isomerase family.
    
 0.842
SDE03208.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
 
  
 0.818
SDC63630.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
    
  0.810
SDC94124.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.806
SDC63705.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
       0.773
SDD18437.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
 0.768
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.