STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC79301.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (314 aa)    
Predicted Functional Partners:
SDC79377.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.981
SDC79339.1
TRAP transporter, DctM subunit.
 
 
 0.978
SDC33378.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.945
SDC33348.1
TRAP transporter, DctM subunit.
 
 
 0.932
SDE29327.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.878
SDC79267.1
5-oxoprolinase (ATP-hydrolysing).
 
     0.815
SDE72289.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.784
SDE72265.1
TRAP transporter, DctM subunit.
 
 
 0.752
SDD60751.1
TRAP transporter, DctM subunit.
  
 
 0.745
SDE29301.1
TRAP transporter, DctM subunit.
 
 
 0.745
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.