STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC79725.1Tripartite-type tricarboxylate transporter, receptor component TctC. (326 aa)    
Predicted Functional Partners:
SDD31234.1
TctA family transporter.
  
 
  0.836
SDD65318.1
TctA family transporter.
  
 
  0.835
SDD92979.1
TctA family transporter.
  
 
  0.835
SDE01925.1
Putative tricarboxylic transport membrane protein.
  
 
  0.802
SDE28271.1
Putative tricarboxylic transport membrane protein.
  
 
  0.802
SDD75326.1
Putative tricarboxylic transport membrane protein.
  
 
  0.786
SDE04535.1
TctA family transporter.
  
 
  0.784
SDC79758.1
Hypothetical protein.
       0.773
SDC79556.1
Catechol 1,2-dioxygenase.
  
 
  0.646
SDC79695.1
Hypothetical protein.
       0.628
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.