STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC80034.1formyl-CoA transferase; Belongs to the CoA-transferase III family. (410 aa)    
Predicted Functional Partners:
SDC80062.1
glutaryl-CoA dehydrogenase.
 
  0.862
SDC79998.1
Uncharacterized membrane protein, DUF4010 family.
       0.741
SDD56382.1
methylmalonyl-CoA mutase.
    
 0.725
SDE41001.1
Amino acid adenylation domain-containing protein.
   
 0.658
SDD53109.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
  
  
 
0.619
SDC80096.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.510
SDC79967.1
Protein of unknown function.
       0.494
SDD16646.1
Acetolactate synthase, large subunit.
  
 
  0.492
SDD75479.1
oxalyl-CoA decarboxylase; Belongs to the TPP enzyme family.
  
 
  0.492
SDD85566.1
Acetolactate synthase, large subunit.
  
 
  0.492
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.