STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDC91868.1Protein of unknown function. (183 aa)    
Predicted Functional Partners:
SDC91837.1
Hypothetical protein.
 
     0.768
SDC91814.1
Ketosteroid isomerase homolog.
 
     0.747
SDD07505.1
Protein of unknown function.
  
     0.703
SDD18503.1
Antitoxin CptB.
  
     0.698
SDD77415.1
Branched-chain amino acid transport protein.
 
     0.669
SDD87217.1
4-amino-4-deoxy-L-arabinose transferase.
  
     0.656
SDD55398.1
PAS domain S-box-containing protein.
  
     0.642
SDD96604.1
Hypothetical protein.
  
     0.630
SDC34141.1
Etoposide-induced protein 2.4 (EI24).
  
     0.621
SDC01708.1
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.599
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.