STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD09584.1TRAP-type C4-dicarboxylate transport system, small permease component. (171 aa)    
Predicted Functional Partners:
SDD09556.1
TRAP transporter, DctM subunit.
 
 0.924
SDD09610.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
 
 0.893
SDD09500.1
Transketolase.
 
     0.826
SDD09529.1
Transketolase.
 
     0.813
SDE53918.1
BNR/Asp-box repeat-containing protein.
  
     0.754
SDC30767.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
  
 
 0.724
SDC24656.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 
 0.724
SDD37788.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 
 0.724
SDE10939.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 
 0.724
SDE25273.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
 
 0.724
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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