STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD09894.12-pyrone-4,6-dicarboxylate lactonase. (279 aa)    
Predicted Functional Partners:
SDD32987.1
Gallate dioxygenase.
 
  
 0.915
SDD09924.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
 
  0.829
SDD33066.1
4-oxalomesaconate hydratase.
 
  
 0.825
SDE95413.1
Hypothetical protein.
  
  
  0.795
SDE11905.1
Predicted dehydrogenase.
 
  
 0.783
SDC34521.1
ferredoxin-NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific).
    
  0.779
SDD09997.1
Hypothetical protein.
 
     0.748
SDD09949.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
    
  0.737
SDC36695.1
Vanillate demethylase subunit A.
  
  
  0.722
SDD33031.1
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
 
   
 0.702
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.