SDD02453.1 protein (Variovorax sp. CF079) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDD02453.1

Pimeloyl-ACP methyl ester carboxylesterase. (303 aa)

Predicted Functional Partners:

SDE41001.1

0.956

SDD30130.1

0.873

SDC52359.1

0.827

SDD15347.1

0.814

engB

0.779

SDC04112.1

0.776

SDD46435.1

0.633

SDD02517.1

0.625

SDC66793.1

0.617

SDE80838.1

0.608

Your Current Organism:

Variovorax sp. CF079

NCBI taxonomy Id: 1882774
Other names: V. sp. CF079

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDC04112.1	SDD02453.1	SAMN05444679_101178	SAMN05444679_10729	2-haloacid dehalogenase.	Pimeloyl-ACP methyl ester carboxylesterase.	0.776
SDC52359.1	SDC66793.1	SAMN05444679_103280	SAMN05444679_104260	Acyl carrier protein.	Amino acid adenylation domain-containing protein.	0.999
SDC52359.1	SDD02453.1	SAMN05444679_103280	SAMN05444679_10729	Acyl carrier protein.	Pimeloyl-ACP methyl ester carboxylesterase.	0.827
SDC52359.1	SDD30130.1	SAMN05444679_103280	SAMN05444679_109142	Acyl carrier protein.	Amino acid adenylation domain-containing protein.	0.999
SDC52359.1	SDD46435.1	SAMN05444679_103280	SAMN05444679_110225	Acyl carrier protein.	acyl-CoA dehydrogenase.	0.729
SDC52359.1	SDE41001.1	SAMN05444679_103280	SAMN05444679_12211	Acyl carrier protein.	Amino acid adenylation domain-containing protein.	0.999
SDC52359.1	SDE80838.1	SAMN05444679_103280	SAMN05444679_13258	Acyl carrier protein.	acyl-CoA dehydrogenase.	0.729
SDC52359.1	engB	SAMN05444679_103280	SAMN05444679_10730	Acyl carrier protein.	GTP-binding protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.877
SDC66793.1	SDC52359.1	SAMN05444679_104260	SAMN05444679_103280	Amino acid adenylation domain-containing protein.	Acyl carrier protein.	0.999
SDC66793.1	SDD02453.1	SAMN05444679_104260	SAMN05444679_10729	Amino acid adenylation domain-containing protein.	Pimeloyl-ACP methyl ester carboxylesterase.	0.617
SDC66793.1	SDD30130.1	SAMN05444679_104260	SAMN05444679_109142	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDC66793.1	SDD46435.1	SAMN05444679_104260	SAMN05444679_110225	Amino acid adenylation domain-containing protein.	acyl-CoA dehydrogenase.	0.759
SDC66793.1	SDE41001.1	SAMN05444679_104260	SAMN05444679_12211	Amino acid adenylation domain-containing protein.	Amino acid adenylation domain-containing protein.	0.999
SDC66793.1	SDE80838.1	SAMN05444679_104260	SAMN05444679_13258	Amino acid adenylation domain-containing protein.	acyl-CoA dehydrogenase.	0.759
SDD02453.1	SDC04112.1	SAMN05444679_10729	SAMN05444679_101178	Pimeloyl-ACP methyl ester carboxylesterase.	2-haloacid dehalogenase.	0.776
SDD02453.1	SDC52359.1	SAMN05444679_10729	SAMN05444679_103280	Pimeloyl-ACP methyl ester carboxylesterase.	Acyl carrier protein.	0.827
SDD02453.1	SDC66793.1	SAMN05444679_10729	SAMN05444679_104260	Pimeloyl-ACP methyl ester carboxylesterase.	Amino acid adenylation domain-containing protein.	0.617
SDD02453.1	SDD02517.1	SAMN05444679_10729	SAMN05444679_10731	Pimeloyl-ACP methyl ester carboxylesterase.	Cytochrome c553.	0.625
SDD02453.1	SDD15347.1	SAMN05444679_10729	SAMN05444679_10846	Pimeloyl-ACP methyl ester carboxylesterase.	Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.	0.814
SDD02453.1	SDD30130.1	SAMN05444679_10729	SAMN05444679_109142	Pimeloyl-ACP methyl ester carboxylesterase.	Amino acid adenylation domain-containing protein.	0.873