STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD21545.1Antibiotic biosynthesis monooxygenase. (99 aa)    
Predicted Functional Partners:
SDD21572.1
Hypothetical protein.
       0.757
SDC30473.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
    
  0.726
SDE66490.1
Vanillate O-demethylase ferredoxin subunit.
    
  0.726
SDD21455.1
Acetyltransferase (GNAT) family protein.
  
    0.696
SDD21481.1
Hypothetical protein.
       0.693
SDD21513.1
Hypothetical protein.
       0.693
SDD21599.1
Uncharacterized conserved protein.
       0.690
SDD21394.1
Transcriptional regulator, AraC family.
       0.672
SDD21363.1
Hypothetical protein.
       0.670
SDD21430.1
Uncharacterized domain 1-containing protein.
       0.670
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.