STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD28855.1Predicted arabinose efflux permease, MFS family. (392 aa)    
Predicted Functional Partners:
SDD28890.1
Uncharacterized conserved protein YidB, DUF937 family.
       0.789
SDD28927.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
  
    0.670
SDE41001.1
Amino acid adenylation domain-containing protein.
  
 
 0.616
SDD28966.1
16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.608
SDD29000.1
Hypothetical protein.
       0.606
SDC52359.1
Acyl carrier protein.
    
 0.571
SDE38325.1
HlyD family secretion protein.
 
 0.521
SDC11267.1
Membrane fusion protein, multidrug efflux system.
  
 0.448
SDC28194.1
HlyD family secretion protein.
  
 0.448
SDD52139.1
Membrane fusion protein, multidrug efflux system.
  
 0.448
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.