STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD30208.1Hypothetical protein. (108 aa)    
Predicted Functional Partners:
SDD30171.1
Hypothetical protein.
       0.773
SDE01222.1
Protein of unknown function.
  
     0.575
SDD30247.1
Hypothetical protein.
       0.551
SDD30278.1
N-acetylglutamate synthase, GNAT family.
       0.518
SDC66861.1
Protein of unknown function.
  
     0.503
SDD30130.1
Amino acid adenylation domain-containing protein.
       0.482
SDC63136.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.470
SDD41254.1
Threonine/homoserine efflux transporter RhtA.
  
     0.463
SDD19060.1
Hypothetical protein.
  
     0.460
SDD74147.1
O-antigen ligase.
  
     0.427
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.