STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD26672.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (229 aa)    
Predicted Functional Partners:
SDD65041.1
GAF domain-containing protein.
 
0.994
SDD65087.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
  
 0.993
SDC26558.1
PAS domain S-box-containing protein.
 
 0.981
SDD57057.1
Response regulator receiver domain-containing protein.
 
 0.981
SDD21749.1
PAS domain S-box-containing protein.
 0.978
SDE52796.1
PAS domain S-box-containing protein.
 0.978
SDE34525.1
Response regulator receiver domain-containing protein.
 
 0.977
SDD26633.1
Two-component system, OmpR family, sensor histidine kinase TctE.
 
 0.976
SDE47006.1
PAS domain S-box-containing protein.
 0.974
SDC27218.1
Cache domain-containing protein.
 
 0.923
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.