STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD54649.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
SDD54620.1
ATP-dependent DNA helicase DinG.
       0.810
SDD08485.1
Protein of unknown function.
  
     0.611
SDC14415.1
Methyltransferase domain-containing protein.
  
     0.579
SDD54674.1
Serine/threonine protein phosphatase PrpC.
       0.574
SDD25924.1
Phasin family protein.
  
     0.546
SDD07006.1
Hypothetical protein.
  
     0.422
SDE57869.1
Phasin family protein.
  
     0.413
SDE02670.1
Putative MetA-pathway of phenol degradation.
  
     0.404
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.