STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD54674.1Serine/threonine protein phosphatase PrpC. (271 aa)    
Predicted Functional Partners:
SDC48912.1
Pyruvate dehydrogenase E1 component beta subunit.
  
 0.981
SDD55242.1
Dihydrolipoamide dehydrogenase.
  
 0.916
SDD52828.1
Dihydrolipoamide dehydrogenase.
  
 0.916
SDD95061.1
Serine/threonine protein kinase.
 
 0.892
SDC53069.1
Serine/threonine protein kinase.
 
 0.891
SDD63681.1
Serine/threonine protein kinase.
 
 0.890
SDE65117.1
Hypothetical protein.
 
 0.889
SDC09632.1
Serine/threonine protein phosphatase PrpC.
 
 0.861
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 
 0.815
SDE11077.1
Aminomethyltransferase.
   
 0.808
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.