STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD62878.1Long-chain acyl-CoA synthetase. (650 aa)    
Predicted Functional Partners:
SDD62838.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
 
    0.954
SDD62804.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
    0.950
SDD62767.1
Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
    0.945
SDE41001.1
Amino acid adenylation domain-containing protein.
  
 0.922
SDD62731.1
Amino acid/amide ABC transporter substrate-binding protein, HAAT family.
 
    0.906
SDD62687.1
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.
 
    0.900
SDD62651.1
phenylacetate-CoA ligase.
 
    0.897
SDC52359.1
Acyl carrier protein.
  
 
0.875
SDD92218.1
Lipase (class 2).
     
 0.855
SDE35595.1
Long-chain acyl-CoA synthetase.
 
 
0.817
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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