Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDC36502.1 | SDD78104.1 | SAMN05444679_102396 | SAMN05444679_113192 | Osmoprotectant transport system permease protein. | Helix-turn-helix. | 0.821 |
| SDC78281.1 | SDD08877.1 | SAMN05444679_105150 | SAMN05444679_107221 | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Cystathionine gamma-lyase. | 0.817 |
| SDC78281.1 | SDD78104.1 | SAMN05444679_105150 | SAMN05444679_113192 | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | Helix-turn-helix. | 0.734 |
| SDC78281.1 | guaA | SAMN05444679_105150 | SAMN05444679_11082 | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.436 |
| SDC78281.1 | metZ | SAMN05444679_105150 | SAMN05444679_101119 | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.838 |
| SDC94193.1 | SDD78069.1 | SAMN05444679_106179 | SAMN05444679_113191 | YXWGXW repeat-containing protein. | Serine/threonine-protein kinase HipA. | 0.687 |
| SDC94193.1 | SDD78104.1 | SAMN05444679_106179 | SAMN05444679_113192 | YXWGXW repeat-containing protein. | Helix-turn-helix. | 0.667 |
| SDD07933.1 | SDD08877.1 | SAMN05444679_107191 | SAMN05444679_107221 | Cytochrome c, mono-and diheme variants. | Cystathionine gamma-lyase. | 0.426 |
| SDD07933.1 | SDD78104.1 | SAMN05444679_107191 | SAMN05444679_113192 | Cytochrome c, mono-and diheme variants. | Helix-turn-helix. | 0.638 |
| SDD08877.1 | SDC78281.1 | SAMN05444679_107221 | SAMN05444679_105150 | Cystathionine gamma-lyase. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.817 |
| SDD08877.1 | SDD07933.1 | SAMN05444679_107221 | SAMN05444679_107191 | Cystathionine gamma-lyase. | Cytochrome c, mono-and diheme variants. | 0.426 |
| SDD08877.1 | SDD78104.1 | SAMN05444679_107221 | SAMN05444679_113192 | Cystathionine gamma-lyase. | Helix-turn-helix. | 0.579 |
| SDD08877.1 | guaA | SAMN05444679_107221 | SAMN05444679_11082 | Cystathionine gamma-lyase. | GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP. | 0.597 |
| SDD41225.1 | SDD78069.1 | SAMN05444679_11092 | SAMN05444679_113191 | YXWGXW repeat-containing protein. | Serine/threonine-protein kinase HipA. | 0.574 |
| SDD41225.1 | SDD78104.1 | SAMN05444679_11092 | SAMN05444679_113192 | YXWGXW repeat-containing protein. | Helix-turn-helix. | 0.598 |
| SDD78069.1 | SDC94193.1 | SAMN05444679_113191 | SAMN05444679_106179 | Serine/threonine-protein kinase HipA. | YXWGXW repeat-containing protein. | 0.687 |
| SDD78069.1 | SDD41225.1 | SAMN05444679_113191 | SAMN05444679_11092 | Serine/threonine-protein kinase HipA. | YXWGXW repeat-containing protein. | 0.574 |
| SDD78069.1 | SDD78104.1 | SAMN05444679_113191 | SAMN05444679_113192 | Serine/threonine-protein kinase HipA. | Helix-turn-helix. | 0.783 |
| SDD78104.1 | SDC36502.1 | SAMN05444679_113192 | SAMN05444679_102396 | Helix-turn-helix. | Osmoprotectant transport system permease protein. | 0.821 |
| SDD78104.1 | SDC78281.1 | SAMN05444679_113192 | SAMN05444679_105150 | Helix-turn-helix. | Threonine dehydratase; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.734 |
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