Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD17758.1 | SDD82548.1 | SAMN05444679_108122 | SAMN05444679_11430 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Carboxypeptidase PM20D1. | 0.647 |
SDD17758.1 | SDE09206.1 | SAMN05444679_108122 | SAMN05444679_11756 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Dipeptidase, putative. | 0.514 |
SDD17758.1 | argA | SAMN05444679_108122 | SAMN05444679_110125 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.986 |
SDD17758.1 | argC | SAMN05444679_108122 | SAMN05444679_11345 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. | 0.896 |
SDD17758.1 | argD | SAMN05444679_108122 | SAMN05444679_108121 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.996 |
SDD17758.1 | argG | SAMN05444679_108122 | SAMN05444679_101111 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.981 |
SDD17758.1 | dapF | SAMN05444679_108122 | SAMN05444679_104189 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.589 |
SDD82514.1 | SDD82548.1 | SAMN05444679_11429 | SAMN05444679_11430 | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | Carboxypeptidase PM20D1. | 0.718 |
SDD82514.1 | SDD82585.1 | SAMN05444679_11429 | SAMN05444679_11431 | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 3-hydroxyacyl-CoA dehydrogenase. | 0.998 |
SDD82548.1 | SDD17758.1 | SAMN05444679_11430 | SAMN05444679_108122 | Carboxypeptidase PM20D1. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.647 |
SDD82548.1 | SDD82514.1 | SAMN05444679_11430 | SAMN05444679_11429 | Carboxypeptidase PM20D1. | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.718 |
SDD82548.1 | SDD82585.1 | SAMN05444679_11430 | SAMN05444679_11431 | Carboxypeptidase PM20D1. | 3-hydroxyacyl-CoA dehydrogenase. | 0.791 |
SDD82548.1 | SDE09206.1 | SAMN05444679_11430 | SAMN05444679_11756 | Carboxypeptidase PM20D1. | Dipeptidase, putative. | 0.623 |
SDD82548.1 | argA | SAMN05444679_11430 | SAMN05444679_110125 | Carboxypeptidase PM20D1. | N-acetylglutamate synthase; Belongs to the acetyltransferase family. ArgA subfamily. | 0.698 |
SDD82548.1 | argC | SAMN05444679_11430 | SAMN05444679_11345 | Carboxypeptidase PM20D1. | N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily. | 0.654 |
SDD82548.1 | argD | SAMN05444679_11430 | SAMN05444679_108121 | Carboxypeptidase PM20D1. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.615 |
SDD82548.1 | argG | SAMN05444679_11430 | SAMN05444679_101111 | Carboxypeptidase PM20D1. | Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 2 subfamily. | 0.640 |
SDD82548.1 | dapB | SAMN05444679_11430 | SAMN05444679_12146 | Carboxypeptidase PM20D1. | Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family. | 0.613 |
SDD82548.1 | dapF | SAMN05444679_11430 | SAMN05444679_104189 | Carboxypeptidase PM20D1. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.623 |
SDD82585.1 | SDD82514.1 | SAMN05444679_11431 | SAMN05444679_11429 | 3-hydroxyacyl-CoA dehydrogenase. | acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. | 0.998 |
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