STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD92789.1Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. (487 aa)    
Predicted Functional Partners:
SDD52139.1
Membrane fusion protein, multidrug efflux system.
 
 0.807
SDC11267.1
Membrane fusion protein, multidrug efflux system.
 
 0.792
SDD92759.1
Tripartite-type tricarboxylate transporter, receptor component TctC.
       0.773
SDE41001.1
Amino acid adenylation domain-containing protein.
 
 
 0.683
SDC12778.1
MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein.
  
   
 0.644
SDD52111.1
MFS transporter, DHA2 family, multidrug resistance protein.
  
     0.624
SDD92722.1
aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A.
       0.592
SDC52359.1
Acyl carrier protein.
    
 0.571
SDE63322.1
Predicted arabinose efflux permease, MFS family.
  
   
 0.568
SDC03471.1
Outer membrane protein.
  
 
 0.510
Your Current Organism:
Variovorax sp. CF079
NCBI taxonomy Id: 1882774
Other names: V. sp. CF079
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